Motif View

Internal ID 17657076
Source Database TransTermHP TERM 797
Feature Type terminator
Name
Rho-independent transcription terminator TERM 797
Sequence GCCCCGCATCCGCGGGGGC
Look for more occurrences
Start 3487276
End 3487294
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGCAACGCAAAA(5' tail) G-CCCCGC(5' stem) ATCC(loop) GCGGGGGC(3' stem) TTTTTCATTCCGGCA(3' tail). Confidence: 90. gap 1, opp_overlap 3487276 3487277, overlap 3487276 3487277

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685