Motif View

Internal ID 17656959
Source Database TransTermHP TERM 596
Feature Type terminator
Name
Rho-independent transcription terminator TERM 596
Sequence GGGCCCGAAGGCCC
Look for more occurrences
Start 2395820
End 2395833
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGTCGAAGAGAAAA(5' tail) GGGCC(5' stem) TTCG(loop) GGCCC(3' stem) TTTTTTCGTTTCTGC(3' tail). Confidence: 91. opp_overlap 2395813 2395812 2395820, overlap 2395815

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685