Motif View

Internal ID 17656554
Source Database TransTermHP TERM 1487
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1487
Sequence CCAAAACCCCTGGTCAGCGATGACCGGGGGTTTTGC
Look for more occurrences
Start 6039544
End 6039579
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTCCGCGCGCAAAA(5' tail) GCAAAACCCCCGGTCA(5' stem) TCGC(loop) TGACCAGGGGTTTTGG(3' stem) GATAGGAGCTTGACG(3' tail). Confidence: 100. opp_overlap 6039550, overlap 6039545 6039550

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685