Motif View

Internal ID 17656485
Source Database TransTermHP TERM 1376
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1376
Sequence GAAACCCCGCCTTGGCGGGGTTTC
Look for more occurrences
Start 5683424
End 5683447
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGCGCAGGCAAAAA(5' tail) GAAACCCCGC(5' stem) CAAG(loop) GCGGGGTTTC(3' stem) TTTTTATCCGGCGGA(3' tail). Confidence: 100. opp_overlap 5683424 5683428, overlap 5683428

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685