Motif View

Internal ID 17656434
Source Database TransTermHP TERM 1291
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1291
Sequence CAGGGCCCTCGGGCCCTG
Look for more occurrences
Start 5323334
End 5323351
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGCGGAAACGAAAA(5' tail) CAGGGCC(5' stem) CGAG(loop) GGCCCTG(3' stem) TTTTCATCGATCACG(3' tail). Confidence: 100. opp_overlap 5323334, overlap 5323329 5323328

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685