Motif View

Internal ID 17656284
Source Database TransTermHP TERM 1093
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1093
Sequence TAGTGGCGCCATTTTCATGACGCCACTA
Look for more occurrences
Start 4831210
End 4831237
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGTCGCTTCCCA(5' tail) TAGTGGCGCCAT(5' stem) TTTC(loop) ATGACGCCACTA(3' stem) TTTTGCCTTTGTAAT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685