Motif View

Internal ID 17656237
Source Database TransTermHP TERM 1001
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1001
Sequence GGCCACCCGTGGGTGGCC
Look for more occurrences
Start 4284371
End 4284388
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACAAGGAAGCACAAA(5' tail) GGCCACC(5' stem) CGTG(loop) GGTGGCC(3' stem) TTTTTTCATACCCGG(3' tail). Confidence: 100. opp_overlap 4284371

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685