Motif View

Internal ID 17656150
Source Database TransTermHP TERM 852
Feature Type terminator
Name
Rho-independent transcription terminator TERM 852
Sequence GCCGGCATTCGCCGGC
Look for more occurrences
Start 3791705
End 3791720
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTAGCGCTTGAAATG(5' tail) GCCGGC(5' stem) ATTC(loop) GCCGGC(3' stem) TTTTTCTTTATGGAT(3' tail). Confidence: 100. opp_overlap 3791704 3791703, overlap 3791699

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685