Motif View

Internal ID 17656030
Source Database TransTermHP TERM 669
Feature Type terminator
Name
Rho-independent transcription terminator TERM 669
Sequence CGGCACCCCGGGGTGCCG
Look for more occurrences
Start 3135009
End 3135026
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCGCGTCGACAGAA(5' tail) CGGCACC(5' stem) CCGG(loop) GGTGCCG(3' stem) TTTTTTCCATCCGCG(3' tail). Confidence: 100. opp_overlap 3135009

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685