Motif View

Internal ID 17656027
Source Database TransTermHP TERM 666
Feature Type terminator
Name
Rho-independent transcription terminator TERM 666
Sequence CCCCGGGCCAGTCCCGGGG
Look for more occurrences
Start 3121375
End 3121393
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGAACGCGACGAGAA(5' tail) CCCCGGG(5' stem) CCAGT(loop) CCCGGGG(3' stem) TTTTCTTTTTTGCGT(3' tail). Confidence: 100. opp_overlap 3121375, overlap 3121370

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685