Motif View

Internal ID 17655923
Source Database TransTermHP TERM 495
Feature Type terminator
Name
Rho-independent transcription terminator TERM 495
Sequence CCCGCTTCGGCGGG
Look for more occurrences
Start 2146523
End 2146536
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTCATCGGAAAAC(5' tail) CCCGC(5' stem) TTCG(loop) GCGGG(3' stem) TTTTTCGCGTTGTGC(3' tail). Confidence: 93. opp_overlap 2146522 2146523, overlap 2146515

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685