Motif View

Internal ID 17655909
Source Database TransTermHP TERM 473
Feature Type terminator
Name
Rho-independent transcription terminator TERM 473
Sequence GAGGGAGCCAGGGCTCCCTC
Look for more occurrences
Start 1986949
End 1986968
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCCTGAAATGAAAA(5' tail) GAGGGAGC(5' stem) CCTG(loop) GCTCCCTC(3' stem) TTCGCGCGTTCGCCG(3' tail). Confidence: 100. opp_overlap 1986951

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685