Motif View

Internal ID 17655877
Source Database TransTermHP TERM 434
Feature Type terminator
Name
Rho-independent transcription terminator TERM 434
Sequence CGCCGGGCATCAGCCCGGCG
Look for more occurrences
Start 1890701
End 1890720
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCGCAATGAAAAA(5' tail) CGCCGGGC(5' stem) ATCA(loop) GCCCGGCG(3' stem) TTTTCGTTTCCGCCT(3' tail). Confidence: 100. opp_overlap 1890701, overlap 1890696

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685