Motif View

Internal ID 17655852
Source Database TransTermHP TERM 398
Feature Type terminator
Name
Rho-independent transcription terminator TERM 398
Sequence GGCTGCTTCGGCAGCC
Look for more occurrences
Start 1719070
End 1719085
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGGGCACAAAAAA(5' tail) GGCTGC(5' stem) CGAA(loop) GCAGCC(3' stem) TTTCTCGCCGGACGT(3' tail). Confidence: 100. opp_overlap 1719070

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685