Motif View

Internal ID 17655845
Source Database TransTermHP TERM 388
Feature Type terminator
Name
Rho-independent transcription terminator TERM 388
Sequence CGGGCCCGCCTCAGCGCGGGCCCG
Look for more occurrences
Start 1681028
End 1681051
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGCCCATCATACAA(5' tail) CGGGCCCGC(5' stem) GCTGAG(loop) GCGGGCCCG(3' stem) TTGGCGGTTCGCAGG(3' tail). Confidence: 91. overlap 1681025

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685