Motif View

Internal ID 17655842
Source Database TransTermHP TERM 385
Feature Type terminator
Name
Rho-independent transcription terminator TERM 385
Sequence GAGCAGCCGAGGCTGCTC
Look for more occurrences
Start 1665984
End 1666001
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGAACTACTCTATA(5' tail) GAGCAGC(5' stem) CGAG(loop) GCTGCTC(3' stem) TTTTCGTTTCACGGA(3' tail). Confidence: 95. opp_overlap 1665986

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685