Motif View

Internal ID 17655534
Source Database TransTermHP TERM 1560
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1560
Sequence CGCGGCCGGTGCAGCGATGCACCGGCCGCG
Look for more occurrences
Start 6080503
End 6080532
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTGCGGGTAAGACGA(5' tail) CGCGGCCGGTGCA(5' stem) TCGC(loop) TGCACCGGCCGCG(3' stem) CGGAGACTCAGGCCT(3' tail). Confidence: 100. overlap 6080500

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685