Motif View

Internal ID 17655235
Source Database TransTermHP TERM 1061
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1061
Sequence GCCCTCGGCACATGCCGGGGGC
Look for more occurrences
Start 4227374
End 4227395
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGAGCCAAATTCAAA(5' tail) GCCCTCGGC(5' stem) ACAT(loop) GCCGGGGGC(3' stem) TTTTTCGTTATCGGG(3' tail). Confidence: 100. opp_overlap 4227374

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685