Motif View

Internal ID 17655012
Source Database TransTermHP TERM 686
Feature Type terminator
Name
Rho-independent transcription terminator TERM 686
Sequence GGCGCGGCGCGAGCCGCGCC
Look for more occurrences
Start 2702157
End 2702176
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGGAACAGGCAAGA(5' tail) GGCGCGGC(5' stem) GCGA(loop) GCCGCGCC(3' stem) TTTTTTCGTCTGGCC(3' tail). Confidence: 100. opp_overlap 2702155 2702157

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685