Motif View

Internal ID 17654777
Source Database TransTermHP TERM 328
Feature Type terminator
Name
Rho-independent transcription terminator TERM 328
Sequence GGCCGGCGAATGCCGGCC
Look for more occurrences
Start 1165658
End 1165675
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGATCCACGAAAAA(5' tail) GGCCGGC(5' stem) GAAT(loop) GCCGGCC(3' stem) TTTTTCATTCTCGCC(3' tail). Confidence: 100. opp_overlap 1165658, overlap 1165652 1165651

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685