Motif View

Internal ID 17654713
Source Database TransTermHP TERM 230
Feature Type terminator
Name
Rho-independent transcription terminator TERM 230
Sequence CGAGGGCGGGGCTGGAAAGCCCCGCCCTCG
Look for more occurrences
Start 860215
End 860244
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGTCGGAACCTGT(5' tail) CGAGGGCGGGGCT(5' stem) GGAA(loop) AGCCCCGCCCTCG(3' stem) TGCGTTTCAGCCCTG(3' tail). Confidence: 100. overlap 860213 860212

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685