Motif View

Internal ID 17653738
Source Database TransTermHP TERM 183
Feature Type terminator
Name
Rho-independent transcription terminator TERM 183
Sequence GGCGCCCACGGGCGCC
Look for more occurrences
Start 955985
End 956000
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 2192 supercont1.1 genomic scaffold, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAGGAAACGAAAAAA(5' tail) GGCGCC(5' stem) CGTG(loop) GGCGCC(3' stem) TTTCGTCGTATGGAG(3' tail). Confidence: 100. opp_overlap 955985, overlap 955977

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685