Pseudomonas sp. CF149, CF149_17720

Gene Feature Overview

Strain	Pseudomonas sp. CF149 GCF_000416155.1|latest
Locus Tag	CF149_17720
NCBI Locus Tag	CF149_RS17505
Name
Replicon	soap_scaffs_149.Contig36
Genomic location	177421 - 180576 (+ strand)

Cross-References

RefSeq	WP_019827864.1
GI	518666158
INSDC	EPJ92483.1
NCBI Locus Tag	CF149_RS17505
NCBI Old Locus Tag	CF149_17720
UniParc	UPI000357E09E
UniProtKB Acc	S6JF83
UniProtKB ID	S6JF83_9PSED
UniRef100	UniRef100_S6JF83
UniRef50	UniRef50_P24177
UniRef90	UniRef90_S6JF83

Product

Feature Type	CDS
Coding Frame	1
Product Name	multidrug/solvent RND transporter TtgB
Synonyms
Evidence for Translation
Charge (pH 7)	-2.89
Kyte-Doolittle Hydrophobicity Value	0.275
Molecular Weight (kDa)	112.8
Isoelectric Point (pI)	6.46

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AMR gene predictions from CARD database

Identified using the Resistance Gene Identifier (RGI)

Model Name	Definition	Accession	Model Type (?)	SNP	Cutoff	Bit Score	Percent Identity	CARD Version
adeF	AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH. [PMID:20696879]	ARO:3000777	protein homolog model		Strict	765.8	41.95	3.2.5

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000417 (2093 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: CF149_17720 Search term: multidrug/solvent RND transporter TtgB

Human Homologs

References