Pseudomonas sp. CF149, CF149_11520

Gene Feature Overview

Strain	Pseudomonas sp. CF149 GCF_000416155.1|latest
Locus Tag	CF149_11520
NCBI Locus Tag	CF149_RS11380
Name
Replicon	soap_scaffs_149.Contig17
Genomic location	43541 - 45646 (+ strand)

Cross-References

RefSeq	WP_019825928.1
GI	518664204
INSDC	EPJ93621.1
NCBI Locus Tag	CF149_RS11380
NCBI Old Locus Tag	CF149_11520
UniParc	UPI000357CDEF
UniProtKB Acc	S6I1B7
UniProtKB ID	S6I1B7_9PSED
UniRef100	UniRef100_S6I1B7
UniRef50	UniRef50_Q3IJ73
UniRef90	UniRef90_Q87WQ8

Product

Feature Type	CDS
Coding Frame	1
Product Name	polynucleotide phosphorylase/polyadenylase
Synonyms
Evidence for Translation
Charge (pH 7)	-18.14
Kyte-Doolittle Hydrophobicity Value	-0.019
Molecular Weight (kDa)	74.9
Isoelectric Point (pI)	4.87

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004385 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: CF149_11520 Search term: polynucleotide phosphorylase/polyadenylase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000400646 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 1.8e-111 Percent Identity: 36.0
Ensembl 110, assembly GRCh38.p14	ENSP00000393953 polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166] E-value: 1.8e-111 Percent Identity: 36.0

References