Pseudomonas aeruginosa 213BR, IAK_RS0123800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas aeruginosa 213BR
GCF_000223965.1|latest
Locus Tag
IAK_RS0123800
Name
Replicon chromosome
Genomic location 5076821 - 5077318 (- strand)

Cross-References

RefSeq WP_003114685.1
GI 489205643
NCBI Locus Tag IAK_RS0123800

Product

Feature Type CDS
Coding Frame 1
Product Name
single-stranded DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -1.77
Kyte-Doolittle Hydrophobicity Value -1.028
Molecular Weight (kDa) 18.6
Isoelectric Point (pI) 5.28

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6JDG DNA BINDING PROTEIN/DNA 02/01/19 Complexed crystal structure of PaSSB with ssDNA dT20 at 2.39 angstrom resolution Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.388 X-RAY DIFFRACTION 100.0
5YUO DNA BINDING PROTEIN 11/22/17 Crystal structure of SSB protein from Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1 2.037 X-RAY DIFFRACTION 100.0
5YUN DNA BINDING PROTEIN 11/22/17 Crystal structure of SSB complexed with myc Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 2.67 X-RAY DIFFRACTION 100.0
7VUM DNA BINDING PROTEIN 11/03/21 Crystal structure of SSB complexed with que Pseudomonas aeruginosa PAO1 2.319 X-RAY DIFFRACTION 100.0
6IRQ DNA BINDING PROTEIN/DNA 11/14/18 Complexed crystal structure of PaSSB with ssDNA dT25 at 1.91 angstrom resolution Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 1.91 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001478 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: IAK_RS0123800

Human Homologs

Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5
Ensembl 110, assembly GRCh38.p14
single stranded DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11317]
E-value: 2.6e-13
Percent Identity: 35.5

References

No references are associated with this feature.