Pseudomonas aeruginosa 213BR, IAK_RS0121170
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa 213BR
GCF_000223965.1|latest |
| Locus Tag |
IAK_RS0121170
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 4492657 - 4494519 (+ strand) |
Cross-References
| RefSeq | WP_019726599.1 |
| GI | 518556392 |
| NCBI Locus Tag | IAK_RS0121170 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
spermidine dehydrogenase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.71 |
| Kyte-Doolittle Hydrophobicity Value | -0.306 |
| Molecular Weight (kDa) | 68.9 |
| Isoelectric Point (pI) | 6.71 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 7D9J | OXIDOREDUCTASE | 10/13/20 | SpdH Spermidine dehydrogenase Y443A mutant | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.19 | X-RAY DIFFRACTION | 99.7 |
| 7D9H | OXIDOREDUCTASE | 10/13/20 | SpdH Spermidine dehydrogenase N33 truncation structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.31 | X-RAY DIFFRACTION | 99.8 |
| 7D9F | OXIDOREDUCTASE | 10/13/20 | SpdH Spermidine dehydrogenase SeMet Structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 1.85 | X-RAY DIFFRACTION | 99.8 |
| 7D9G | OXIDOREDUCTASE | 10/13/20 | SpdH Spermidine dehydrogenase native structure | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.4 | X-RAY DIFFRACTION | 99.8 |
| 7D9I | OXIDOREDUCTASE | 10/13/20 | SpdH Spermidine dehydrogenase D282A mutant | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 2.1 | X-RAY DIFFRACTION | 99.7 |
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001969 (322 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: IAK_RS0121170
Search term: spermidine dehydrogenase
|
Human Homologs
References
No references are associated with this feature.