Pseudomonas aeruginosa 213BR, IAK_RS0113820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa 213BR
GCF_000223965.1|latest |
| Locus Tag |
IAK_RS0113820
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2977402 - 2978898 (- strand) |
Cross-References
| RefSeq | WP_003089909.1 |
| GI | 489180428 |
| NCBI Locus Tag | IAK_RS0113820 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
RND transporter
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -7.05 |
| Kyte-Doolittle Hydrophobicity Value | -0.238 |
| Molecular Weight (kDa) | 53.9 |
| Isoelectric Point (pI) | 5.11 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| OpmB | OpmB is an outer membrane efflux protein in Pseudomonas aeruginosa that shows functional cooperation with MuxABC, to form the efflux pump system MuxABC-OpmB. [PMID:12445646] | ARO:3004072 | protein homolog model | Perfect | 943.3 | 100.0 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003040 (534 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: IAK_RS0113820
Search term: RND transporter
|
Human Homologs
References
No references are associated with this feature.