Pseudomonas syringae pv. syringae SM, PssSM_4836 (betA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. syringae SM
GCF_000412165.1|latest |
| Locus Tag |
PssSM_4836
|
| NCBI Locus Tag | PSSSM_RS02145 |
| Name |
betA
|
| Replicon | chromosome |
| Genomic location | 5605772 - 5607478 (- strand) |
Cross-References
| RefSeq | WP_003341320.1 |
| GI | 489435797 |
| EC Number | 1.1.99.1 |
| NCBI Locus Tag | PSSSM_RS02145 |
| NCBI Old Locus Tag | PssSM_4836 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
choline dehydrogenase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -5.07 |
| Kyte-Doolittle Hydrophobicity Value | -0.451 |
| Molecular Weight (kDa) | 62.7 |
| Isoelectric Point (pI) | 6.33 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004937 (526 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PssSM_4836
Search term: betA
Search term: choline dehydrogenase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
choline dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24288]
E-value:
6.1e-147
Percent Identity:
50.2
|
References
No references are associated with this feature.