Pseudomonas syringae pv. syringae SM, PssSM_3485 (fliR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae SM
GCF_000412165.1|latest
Locus Tag
PssSM_3485
NCBI Locus TagPSSSM_RS08665
Name
fliR
Replicon chromosome
Genomic location 4137563 - 4138339 (- strand)

Cross-References

RefSeq WP_016568593.1
GI 514421430
NCBI Locus Tag PSSSM_RS08665
NCBI Old Locus Tag PssSM_3485

Product

Feature Type CDS
Coding Frame 1
Product Name
Flagellar biosynthesis protein FliR
Synonyms
Evidence for Translation
Charge (pH 7) 0.46
Kyte-Doolittle Hydrophobicity Value 1.079
Molecular Weight (kDa) 27.8
Isoelectric Point (pI) 7.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Flagellar
Note: This is based on PSORTb V3.0 secondary localization prediction
 Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6S3R PROTEIN TRANSPORT 06/25/19 Structure of the FliPQR complex from the flagellar type 3 secretion system of Pseudomonas savastanoi. Pseudomonas savastanoi pv. phaseolicola; Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) 3.5 ELECTRON MICROSCOPY 92.2

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001365 (533 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PssSM_3485
Search term: fliR

Human Homologs

References

No references are associated with this feature.