Pseudomonas putida KT2440, PP_2668 (pedB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas putida KT2440 (TIGR)
GCF_000007565.2|latest
Locus Tag
PP_2668
Name
pedB
Replicon chromosome
Genomic location 3055621 - 3056361 (- strand)
CommentEssential for PedH-dependent growth under low (nM) concentrations of lanthanides

Cross-References

RefSeq NP_744812.1
GI 26989387

Product

Feature Type CDS
Coding Frame 1
Product Name
PedB
Synonyms
Evidence for Translation
Charge (pH 7)
Kyte-Doolittle Hydrophobicity Value -0.227
Molecular Weight (kDa) 27.2
Isoelectric Point (pI) 9.70

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PP_2668
Search term: pedB
Search term: PedB

Human Homologs

Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 6 (Langereis blood group) [Source:HGNC Symbol;Acc:HGNC:47]
E-value: 1.4e-23
Percent Identity: 33.8
Ensembl 110, assembly GRCh38.p14
ATP binding cassette subfamily B member 6 (Langereis blood group) [Source:HGNC Symbol;Acc:HGNC:47]
E-value: 1.4e-23
Percent Identity: 33.8

References

Rare Earth Element (REE)-Dependent Growth of Pseudomonas putida KT2440 Relies on the ABC-Transporter PedA1A2BC and Is Influenced by Iron Availability.
Wehrmann M, Berthelot C, Billard P, Klebensberger J
Front Microbiol 2019;10:2494
PubMed ID: 31736923