Pseudomonas plecoglossicida NyZ12, RK21_RS09390 (ligD)

Gene Feature Overview

Strain	Pseudomonas plecoglossicida NyZ12 GCF_000831585.1|latest
Locus Tag	RK21_RS09390
Name	ligD Synonym: RK21_01966
Replicon	chromosome
Genomic location	2111777 - 2114269 (- strand)

Cross-References

RefSeq	WP_024087138.1
GI	568212774

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7)	15.94
Kyte-Doolittle Hydrophobicity Value	-0.474
Molecular Weight (kDa)	92.6
Isoelectric Point (pI)	9.39

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Pathogen Association Analysis

Results

Analysis not done

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003336 (490 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: RK21_RS09390 Search term: ligD Search term: ATP-dependent DNA ligase

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000263274 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000442841 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000471861 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514667 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514671 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514663 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514664 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8
Ensembl 110, assembly GRCh38.p14	ENSP00000514670 DNA ligase 1 [Source:HGNC Symbol;Acc:HGNC:6598] E-value: 3.4e-21 Percent Identity: 28.8

References