Pseudomonas fluorescens C3, VC34_RS00650
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens C3
GCF_000967955.1|latest |
| Locus Tag |
VC34_RS00650
|
| Name |
Synonym: VC34_00650 |
| Replicon | contig_1 |
| Genomic location | 158500 - 159375 (- strand) |
Cross-References
| RefSeq | WP_046044807.1 |
| GI | 802161569 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ABC transporter
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -2.71 |
| Kyte-Doolittle Hydrophobicity Value | 0.029 |
| Molecular Weight (kDa) | 32.4 |
| Isoelectric Point (pI) | 6.51 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004529 (504 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: VC34_RS00650
Search term: ABC transporter
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
4.5e-13
Percent Identity:
26.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
4.5e-13
Percent Identity:
26.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
4.5e-13
Percent Identity:
26.3
|
References
No references are associated with this feature.