Pseudomonas fluorescens MEP34, RU10_RS22105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens MEP34
GCF_000834545.1|latest |
| Locus Tag |
RU10_RS22105
|
| Name |
Synonym: RU10_22110 |
| Replicon | contig_31 |
| Genomic location | 15894 - 17840 (+ strand) |
Cross-References
| RefSeq | WP_042610140.1 |
| GI | 756161642 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
DeoR family transcriptional regulator
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -8.20 |
| Kyte-Doolittle Hydrophobicity Value | -0.077 |
| Molecular Weight (kDa) | 72.0 |
| Isoelectric Point (pI) | 5.84 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3PJX | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32 | Pseudomonas fluorescens | 2.0002 | X-RAY DIFFRACTION | 94.8 |
| 3PJT | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 | Pseudomonas fluorescens | 2.5154 | X-RAY DIFFRACTION | 96.8 |
| 3PJW | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, I23 | Pseudomonas fluorescens | 3.1006 | X-RAY DIFFRACTION | 94.8 |
| 3PJU | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 | Pseudomonas fluorescens | 2.4991 | X-RAY DIFFRACTION | 96.8 |
| 3PFM | SIGNALING PROTEIN | 10/28/10 | Crystal structure of a EAL domain of GGDEF domain protein from Pseudomonas fluorescens Pf | Pseudomonas fluorescens | 2.908 | X-RAY DIFFRACTION | 90.0 |
| 3PJV | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD periplasmic domain | Pseudomonas fluorescens | 1.7727 | X-RAY DIFFRACTION | 93.8 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001350 (454 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: RU10_RS22105
Search term: DeoR family transcriptional regulator
|
Human Homologs
References
No references are associated with this feature.