Pseudomonas aeruginosa LESB58, PALES_55911 (rimK)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa LESB58
GCF_000026645.1|latest
Locus Tag
PALES_55911
Name
rimK
Replicon chromosome
Genomic location 6185068 - 6185973 (+ strand)

Cross-References

RefSeq YP_002443169
GI 218894299
Entrez 7179274

Product

Feature Type CDS
Coding Frame 1
Product Name
ribosomal protein S6 modification protein
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 8.83
Kyte-Doolittle Hydrophobicity Value -0.020
Molecular Weight (kDa) 32.6
Isoelectric Point (pI) 9.77

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7QYR LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT 2.4 X-RAY DIFFRACTION 100.0
7QYS LIGASE 01/29/22 Crystal structure of RimK from Pseudomonas syringae DC3000 Pseudomonas syringae pv. tomato str. DC3000 2.9 X-RAY DIFFRACTION 92.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 370 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004781 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PALES_55911
Search term: rimK

Human Homologs

References

No references are associated with this feature.