Pseudomonas putida NBRC 14164, PP4_41810

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas putida NBRC 14164 - Assembly GCF_000412675.1
GCF_000412675.1|latest
Locus Tag
PP4_41810
Name
Replicon chromosome
Genomic location 4751294 - 4751593 (+ strand)

Cross-References

RefSeq YP_008115218.1
GI 512687238
Entrez 16136619
INSDC BAN56034.1
UniParc UPI00005FB3A6
UniProtKB Acc T2HAT9
UniProtKB ID T2HAT9_PSEPU
UniRef100 UniRef100_A5W856
UniRef50 UniRef50_Q88MI6
UniRef90 UniRef90_Q88MI6

Product

Feature Type CDS
Coding Frame 1
Product Name
putative toxin-antitoxin system antitoxin component
Synonyms
Evidence for Translation
Charge (pH 7) -1.56
Kyte-Doolittle Hydrophobicity Value -0.070
Molecular Weight (kDa) 10.9
Isoelectric Point (pI) 5.68

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6F8H ANTITOXIN 12/13/17 antitoxin GraA Pseudomonas putida 2.002 X-RAY DIFFRACTION 99.0
6FIX ANTITOXIN 01/19/18 antitoxin GraA in complex with its operator Pseudomonas putida; SYNTHETIC CONSTRUCT 3.8 X-RAY DIFFRACTION 99.0
6F8S TOXIN 12/13/17 Toxin-Antitoxin complex GraTA Pseudomonas putida; Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440) 2.5 X-RAY DIFFRACTION 99.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 224 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004324 (343 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PP4_41810

Human Homologs

References

No references are associated with this feature.