Pseudomonas protegens Pf-5, PFL_5728 (soxB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5728
Name
soxB
Replicon chromosome
Genomic location 6526312 - 6527562 (- strand)

Cross-References

RefSeq YP_262786.1
GI 70733013
EC Number 1.5.3.1
Entrez 3480100
INSDC AAY94918.1
NCBI Locus Tag PFL_5728
UniParc UPI000054E11B
UniProtKB Acc Q4K4P7
UniProtKB ID Q4K4P7_PSEF5
UniRef100 UniRef100_Q4K4P7
UniRef50 UniRef50_O87388
UniRef90 UniRef90_Q9HTE8

Product

Feature Type CDS
Coding Frame 1
Product Name
sarcosine oxidase subunit beta
Synonyms
Evidence for Translation
Charge (pH 7) 5.69
Kyte-Doolittle Hydrophobicity Value -0.165
Molecular Weight (kDa) 45264.2
Isoelectric Point (pI) 8.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 279 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004970 (512 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5728
Search term: soxB

Human Homologs

References

No references are associated with this feature.