Pseudomonas protegens Pf-5, PFL_5512

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5512
Name
Replicon chromosome
Genomic location 6297465 - 6298262 (- strand)

Cross-References

RefSeq YP_262580.1
GI 70732813
Entrez 3479900
INSDC AAY94718.1
NCBI Locus Tag PFL_5512
UniParc UPI000054E05B
UniProtKB Acc Q4K5A3
UniProtKB ID Q4K5A3_PSEF5
UniRef100 UniRef100_Q4K5A3
UniRef50 UniRef50_G8PZ29
UniRef90 UniRef90_Q4K5A3

Product

Feature Type CDS
Coding Frame 1
Product Name
periplasmic cobalamin-binding protein
Synonyms
Evidence for Translation
Charge (pH 7) -0.61
Kyte-Doolittle Hydrophobicity Value 0.149
Molecular Weight (kDa) 28580.9
Isoelectric Point (pI) 6.53

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 387 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001639 (919 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5512

Human Homologs

References

No references are associated with this feature.