Pseudomonas protegens Pf-5, PFL_5289 (pilD)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_5289
Name	pilD
Replicon	chromosome
Genomic location	6058937 - 6059809 (+ strand)

Cross-References

RefSeq	YP_262361.1
GI	70732598
Entrez	3479685
INSDC	AAY94503.1
NCBI Locus Tag	PFL_5289
UniParc	UPI000054DF83
UniProtKB Acc	Q4K5X2
UniProtKB ID	Q4K5X2_PSEF5
UniRef100	UniRef100_Q4K5X2
UniRef50	UniRef50_Q4K5X2
UniRef90	UniRef90_Q4K5X2

Product

Feature Type	CDS
Coding Frame	1
Product Name	type IV pilus prepilin peptidase PilD
Synonyms
Evidence for Translation
Charge (pH 7)	0.24
Kyte-Doolittle Hydrophobicity Value	0.762
Molecular Weight (kDa)	32052.8
Isoelectric Point (pI)	7.08

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 363 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004109 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_5289 Search term: pilD Search term: type IV pilus prepilin peptidase PilD

Human Homologs

References