Pseudomonas protegens Pf-5, PFL_5216

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5216
Name
Replicon chromosome
Genomic location 5972574 - 5973902 (+ strand)

Cross-References

RefSeq YP_262293.1
GI 70732530
Entrez 3479617
INSDC AAY94435.1
NCBI Locus Tag PFL_5216
UniParc UPI000054DF40
UniProtKB Acc Q4K640
UniProtKB ID Q4K640_PSEF5
UniRef100 UniRef100_Q4K640
UniRef50 UniRef50_A0A024HAV0
UniRef90 UniRef90_Q4K640

Product

Feature Type CDS
Coding Frame 1
Product Name
OprD family outer membrane porin
Synonyms
Evidence for Translation
Charge (pH 7) -5.55
Kyte-Doolittle Hydrophobicity Value -0.415
Molecular Weight (kDa) 48.9
Isoelectric Point (pI) 5.49

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 19 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000187 (1579 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5216

Human Homologs

References

No references are associated with this feature.