Pseudomonas protegens Pf-5, PFL_5050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5050
Name
Replicon chromosome
Genomic location 5810034 - 5810711 (+ strand)

Cross-References

RefSeq YP_262129.1
GI 70732373
Entrez 3479460
INSDC AAY94278.1
NCBI Locus Tag PFL_5050
UniParc UPI000054DE9C
UniProtKB Acc Q4K6K4
UniProtKB ID Q4K6K4_PSEF5
UniRef100 UniRef100_Q4K6K4
UniRef50 UniRef50_Q4K6K4
UniRef90 UniRef90_Q4K6K4

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA-binding heavy metal response regulator
Synonyms
Evidence for Translation
Charge (pH 7) -2.03
Kyte-Doolittle Hydrophobicity Value -0.098
Molecular Weight (kDa) 25113.7
Isoelectric Point (pI) 6.15

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 623 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001354 (1369 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5050

Human Homologs

References

No references are associated with this feature.