Pseudomonas protegens Pf-5, PFL_4763 (ruvB)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_4763
Name	ruvB
Replicon	chromosome
Genomic location	5500653 - 5501711 (- strand)

Cross-References

RefSeq	YP_261844.1
GI	70732088
EC Number	3.6.1.-
Entrez	3479174
INSDC	AAY93993.1
NCBI Locus Tag	PFL_4763
UniParc	UPI000054DD80
UniProtKB Acc	Q4K7D9
UniProtKB ID	RUVB_PSEF5
UniRef100	UniRef100_Q4K7D9
UniRef50	UniRef50_Q5SL87
UniRef90	UniRef90_Q4K7D9

Product

Feature Type	CDS
Coding Frame	1
Product Name	Holliday junction DNA helicase RuvB
Synonyms
Evidence for Translation
Charge (pH 7)	-12.05
Kyte-Doolittle Hydrophobicity Value	-0.111
Molecular Weight (kDa)	39.0
Isoelectric Point (pI)	4.90

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
7X7P	MOTOR PROTEIN/DNA	03/10/22	CryoEM structure of dsDNA-RuvB-RuvA domain3 complex	Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT	7.02	ELECTRON MICROSCOPY	90.4

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 586 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000932 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_4763 Search term: ruvB Search term: Holliday junction DNA helicase RuvB

Human Homologs

References