Pseudomonas protegens Pf-5, PFL_3987 (clpP)

Gene Feature Overview

Strain	Pseudomonas protegens Pf-5 GCF_000012265.1|latest
Locus Tag	PFL_3987
Name	clpP
Replicon	chromosome
Genomic location	4605758 - 4606393 (- strand)

Cross-References

RefSeq	YP_261087.1
GI	70731346
EC Number	3.4.21.92
Entrez	3477745
INSDC	AAY93251.1
NCBI Locus Tag	PFL_3987
UniParc	UPI000054DA8F
UniProtKB Acc	Q4K9J6
UniProtKB ID	CLPP_PSEF5
UniRef100	UniRef100_Q4K9J6
UniRef50	UniRef50_Q4K9J6
UniRef90	UniRef90_Q4K9J6

Product

Feature Type	CDS
Coding Frame	1
Product Name	ATP-dependent Clp protease proteolytic subunit
Synonyms
Evidence for Translation
Charge (pH 7)	-4.17
Kyte-Doolittle Hydrophobicity Value	-0.150
Molecular Weight (kDa)	23.5
Isoelectric Point (pI)	5.32

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 582 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003596 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PFL_3987 Search term: clpP Search term: ATP-dependent Clp protease proteolytic subunit

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000245816 caseinolytic mitochondrial matrix peptidase proteolytic subunit [Source:HGNC Symbol;Acc:HGNC:2084] E-value: 2.8e-60 Percent Identity: 55.7

References