Pseudomonas protegens Pf-5, PFL_3479

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3479
Name
Replicon chromosome
Genomic location 3999326 - 4000222 (+ strand)

Cross-References

RefSeq YP_260582.1
GI 70730841
Entrez 3475513
INSDC AAY92746.1
NCBI Locus Tag PFL_3479
UniParc UPI000054D89B
UniProtKB Acc Q4KB01
UniProtKB ID Q4KB01_PSEF5
UniRef100 UniRef100_Q4KB01
UniRef50 UniRef50_Q4KB01
UniRef90 UniRef90_Q4KB01

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) 1.11
Kyte-Doolittle Hydrophobicity Value -0.073
Molecular Weight (kDa) 33.4
Isoelectric Point (pI) 7.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 289 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004524 (333 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3479

Human Homologs

References

No references are associated with this feature.