Pseudomonas protegens Pf-5, PFL_3310 (ppyR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3310
Name
ppyR
Replicon chromosome
Genomic location 3820150 - 3820407 (- strand)

Cross-References

RefSeq YP_260415.1
GI 70730674
Entrez 3476320
INSDC AAY92579.1
NCBI Locus Tag PFL_3310
UniParc UPI000054D7F4
UniProtKB Acc Q4KBG8
UniProtKB ID Q4KBG8_PSEF5
UniRef100 UniRef100_Q4KBG8
UniRef50 UniRef50_Q4KBG8
UniRef90 UniRef90_Q4KBG8

Product

Feature Type CDS
Coding Frame 1
Product Name
transmembrane sensor/regulator PpyR
Synonyms
Evidence for Translation
Charge (pH 7) 6.11
Kyte-Doolittle Hydrophobicity Value 0.744
Molecular Weight (kDa) 9.3
Isoelectric Point (pI) 10.06

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in one genus

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002894 (346 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3310
Search term: ppyR

Human Homologs

References

No references are associated with this feature.