Pseudomonas protegens Pf-5, PFL_3119 (fapB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3119
Name
fapB
Replicon chromosome
Genomic location 3589667 - 3590245 (+ strand)

Cross-References

RefSeq YP_260225.1
GI 70730484
Entrez 3477290
INSDC AAY92389.1
NCBI Locus Tag PFL_3119
UniParc UPI000054D736
UniProtKB Acc Q4KC08
UniProtKB ID Q4KC08_PSEF5
UniRef100 UniRef100_Q4KC08
UniRef50 UniRef50_A0A075P374
UniRef90 UniRef90_Q4KC08

Product

Feature Type CDS
Coding Frame 1
Product Name
FapB
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 1.95
Kyte-Doolittle Hydrophobicity Value -0.179
Molecular Weight (kDa) 19340.0
Isoelectric Point (pI) 9.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Extracellular Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 10 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003477 (463 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3119
Search term: fapB
Search term: FapB

Human Homologs

References

Functional amyloid in Pseudomonas.
Dueholm MS, Petersen SV, Sønderkær M, Larsen P, Christiansen G, Hein KL, Enghild JJ, Nielsen JL, Nielsen KL, Nielsen PH, Otzen DE
Mol Microbiol 2010 Aug;77(4):1009-20
PubMed ID: 20572935