Pseudomonas protegens Pf-5, PFL_3045 (arnA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3045
Name
arnA
Replicon chromosome
Genomic location 3511106 - 3513112 (+ strand)

Cross-References

RefSeq YP_260151.1
GI 70730410
EC Number 1.1.1.-
EC Number 2.1.2.-
Entrez 3475938
INSDC AAY92315.1
NCBI Locus Tag PFL_3045
UniParc UPI000054D6EC
UniProtKB Acc Q4KC82
UniProtKB ID ARNA_PSEF5
UniRef100 UniRef100_Q4KC82
UniRef50 UniRef50_O52325
UniRef90 UniRef90_Q4KC82

Product

Feature Type CDS
Coding Frame 1
Product Name
bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -2.42
Kyte-Doolittle Hydrophobicity Value -0.270
Molecular Weight (kDa) 74.5
Isoelectric Point (pI) 6.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 646 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002112 (427 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3045
Search term: arnA

Human Homologs

Ensembl 110, assembly GRCh38.p14
UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
E-value: 2.8e-26
Percent Identity: 24.9
Ensembl 110, assembly GRCh38.p14
UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
E-value: 2.8e-26
Percent Identity: 24.9

References

No references are associated with this feature.