Pseudomonas protegens Pf-5, PFL_2820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2820
Name
Replicon chromosome
Genomic location 3143531 - 3145243 (+ strand)

Cross-References

RefSeq YP_259926.2
GI 346642957
Entrez 3478067
INSDC AAY92092.2
NCBI Locus Tag PFL_2820
UniParc UPI000219FF64
UniProtKB Acc Q4KCV7
UniProtKB ID Q4KCV7_PSEF5
UniRef100 UniRef100_Q4KCV7
UniRef50 UniRef50_Q9I5N4
UniRef90 UniRef90_Q4KCV7

Product

Feature Type CDS
Coding Frame 1
Product Name
OMP85 family outer membrane protein
Synonyms
Evidence for Translation
Charge (pH 7) -12.88
Kyte-Doolittle Hydrophobicity Value -0.342
Molecular Weight (kDa) 62400.1
Isoelectric Point (pI) 5.00

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 119 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000040 (1614 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2820

Human Homologs

References

No references are associated with this feature.