Pseudomonas protegens Pf-5, PFL_2291

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_2291
Name
Replicon chromosome
Genomic location 2551927 - 2552448 (+ strand)

Cross-References

RefSeq YP_259398.1
GI 70729659
Entrez 3475849
INSDC AAY91564.1
NCBI Locus Tag PFL_2291
UniParc UPI000054D414
UniProtKB Acc Q4KED5
UniProtKB ID Q4KED5_PSEF5
UniRef100 UniRef100_Q4KED5
UniRef50 UniRef50_Q6U5X2
UniRef90 UniRef90_Q4KED5

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor, FecI family
Synonyms
Evidence for Translation
Charge (pH 7) -0.93
Kyte-Doolittle Hydrophobicity Value -0.183
Molecular Weight (kDa) 19782.7
Isoelectric Point (pI) 6.67

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 258 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000463 (1798 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_2291

Human Homologs

References

No references are associated with this feature.