Pseudomonas protegens Pf-5, PFL_1925 (ccoN_2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1925
Name
ccoN_2
Replicon chromosome
Genomic location 2145126 - 2146550 (- strand)

Cross-References

RefSeq YP_259044.1
GI 70729307
EC Number 1.9.3.1
Entrez 3477616
INSDC AAY91212.1
NCBI Locus Tag PFL_1925
UniParc UPI000054D2B9
UniProtKB Acc Q4KFD9
UniProtKB ID Q4KFD9_PSEF5
UniRef100 UniRef100_Q4KFD9
UniRef50 UniRef50_Q9I3G0
UniRef90 UniRef90_Q4KFD9

Product

Feature Type CDS
Coding Frame 1
Product Name
cbb3-type cytochrome c oxidase subunit I
Synonyms
Evidence for Translation
Charge (pH 7) 9.49
Kyte-Doolittle Hydrophobicity Value 0.614
Molecular Weight (kDa) 52957.9
Isoelectric Point (pI) 9.19

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
5DJQ OXIDOREDUCTASE 09/02/15 The structure of CBB3 cytochrome oxidase. Pseudomonas stutzeri; Pseudomonas stutzeri ATCC 14405 = CCUG 16156 3.2 X-RAY DIFFRACTION 90.5
3MK7 OXIDOREDUCTASE 04/14/10 The structure of CBB3 cytochrome oxidase Pseudomonas stutzeri 3.2 X-RAY DIFFRACTION 90.5

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001566 (1638 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1925
Search term: ccoN_2

Human Homologs

References

No references are associated with this feature.