Pseudomonas protegens Pf-5, PFL_1920 (ccoO_1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_1920
Name
ccoO_1
Replicon chromosome
Genomic location 2140786 - 2141394 (- strand)

Cross-References

RefSeq YP_259039.1
GI 70729302
EC Number 1.9.3.1
Entrez 3477611
INSDC AAY91207.1
NCBI Locus Tag PFL_1920
UniParc UPI000054D2B4
UniProtKB Acc Q4KFE4
UniProtKB ID Q4KFE4_PSEF5
UniRef100 UniRef100_Q4KFE4
UniRef50 UniRef50_Q4KFE4
UniRef90 UniRef90_Q4KFE4

Product

Feature Type CDS
Coding Frame 1
Product Name
cbb3-type cytochrome c oxidase subunit II
Synonyms
Evidence for Translation
Charge (pH 7) 3.13
Kyte-Doolittle Hydrophobicity Value -0.298
Molecular Weight (kDa) 22.5
Isoelectric Point (pI) 8.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 217 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003806 (921 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_1920
Search term: ccoO_1

Human Homologs

References

No references are associated with this feature.